The Brazil midfielder has returned home to join Palmeiras today.
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"From the first day at Fulham, I felt at home," Pereira said. "Thank you to my team-mates, staff, and fans for every moment.
"After three years, I leave proud of what we achieved together. Fulham will always be part of me."
Pereira has signed a deal to 2028 at Palmeiras, which have paid €10m for the 29 year-old.