Inter director Marco Branca was also present, sparking rumours of crisis talks.
"I wanted to hear how the meeting had gone between Benitez, my son and Branca," insisted President Moratti in a note on the official club website.
"It was a working meeting, just as I hope Benitez will have every day with the medical staff, Branca and others.
"There were also similar meetings with Jose Mourinho. I certainly don't change my mind from one day to the next."