The 24-year old Germany international, who is a target for Manchester United, is out of contract in the summer of 2015 and is believed to be pondering his future.
Kroos posted on Facebook that at this point in time he had not agreed anything with the Bavarians but said suggestions of a possible departure were certainly premature.
"Much has been written, especially in the last few days, about my sporting future," Kroos wrote on his official Facebook page. "But you shouldn't believe everything in some newspapers.
"The fact is I am very happy to play for Bayern and my position in the team is very good. The fact is also that we couldn't agree a new contract.
"Since it runs until 2015 this is not a big problem, and we will see what the future brings.
"My focus is on the sport side of things and we will do everything possible to complete the season as successfully as last season."
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