Bayern will defend a 1-1 Champions League aggregate score at the Allianz Arena.
"We've definitely got a chance," Jones said. "They had a lot of possession but they probably did not create as many chances as they have done in other games.
"Defensively we were reasonably sound, albeit they scored a goal. We studied Bayern and what their weaknesses are and hopefully we can exploit them again.
"You can see that on the counter-attack we can be dangerous even though it will be a completely different game in Munich."