Both Faye and Ivan Campo missed the pre-season friendly against Tranmere Rovers, but Lee insists nothing can be read into their omission.
He told the club's official website: "We left out Abdoulaye Faye and Ivan Campo because they're on specific training programmes which are tailored for individual players.
"We know exactly how many minutes each individual must play and when they must rest. This all down to our attention to detail on every aspect of our game.
"But we've not had an offer from Wigan for Abdoulaye Faye.
"I speak to Chris Hutchings all the time and I know they haven't made an offer for the player."